I know very little about this bike, so maybe this is normal.
For about a second after shutoff I hear this rolling rattle sound in the engine like a gear is still spinning loosely somewhere.
Also first gear tends to make the whole bike shake like crazy from a dead stop, almost like only one cylinder is firing...but I know both are popping. Definitely enough to make the bars dance...like a Harley actually.
Rattling - don't know; I'd have to hear it in person; not normal though. If I were to conjecture, I'd say camchain, but it might be dependent on mileage.
Shaking like crazy from a stop - slip/feather the clutch some more, but give it more gas at first and get the rpm's up (~3,000rpm).